1. Multiplexed Quantitative Proteomics for High-Throughput Comprehensive Proteome Comparisons of Human Cell Lines Amanda Edwards and Wilhelm Haas 2. Sample Preparation Approaches for iTRAQ Labelling and Quantitative Proteomic Analyses in Systems Biology Christos Spanos and J. Bernadette Moore 3. Two Birds with One Stone: Parallel Quantification of Proteome and Phospho-Proteome Using iTRAQ Fiorella A. Solari, Laxmikanth Kollipara, Albert Sickmann, and Ren é P. Zahedi 4. Selected Reaction Monitoring to Measure Proteins of Interest in Complex Samples: A Practical Guide Yuehan Feng and Paola Picotti 5.
Monitoring PPARG Induced Changes in Glycolysis by Selected Reaction Monitoring Mass Spectrometry Andreas Hentschel and Robert Ahrends 6. A Targeted MRM Approach for Tempo-Spatial Proteomics Analyses Annie Moradian, Tanya R. Porras-Yakushi, Michael J. Sweredoski, and Sonja Hess 7. Targeted Phospho-Proteome Analysis Using Selected/Mul tiple Reaction Monitoring (SRM/MRM) Jun Adachi, Ryohei Narumi, and Takeshi Tomonaga 8. Testing Suitability of Cell Cultures for SILAC-Experiments Us ing SWATH-Mass Spectrometry Yvonne Reinders, Daniel V ö ller, Anja-K. Bosserhoff, Peter J. Oefner, and Joerg Reinders 9.
Combining Amine-Reactive Cross-Linkers and Photo-Reactive Amino Acids for 3D-Structure Analysis of Proteins and Protein Complexes Philip L ö ssl and Andrea Sinz 10. Tissue MALDI Mass Spectrometry Imaging (MALDI MSI) of Peptides Birte Beine, Hanna C. Diehl, Helmut E. Meyer, and Corinna Henkel 11. Ethyl Esterification for MALDI-MS Analysis of Protein Glycosylation Karli R. Reiding, Emanuela Lonardi, Agnes L. Hipgrave Ederveen, and Manfred Wuhrer 12. Characterization of Protein N-Glycosylation by Analysis of ZIC-HILIC-Enriched Intact Proteolytic Glycopeptides Gottfried Pohlentz, Kristina Marx, and Michael Mormann 13.
Simple and Effective Affinity Purification Procedures for Mass Spectrometry-Based Identification of Protein-Protein Interactions in Cell Signaling Pathways Julian H. M. Kwan and Andrea Emili 14. A Systems Approach to Understand Antigen Presentation and the Immune Response Nadine L. Dudek, Nathan P. Croft, Ralf B. Schittenhelm, Sri H. Ramara thinam, and Anthony W.
Purcell 15. Profiling of Small Molecules by Chemical Proteomics Kilian HUber and Giulio Superti-Furga 16. Generating Sample Specific Databases for Mass Spectrometry Based Proteomic Analysis by Using RNA Sequencing Toni Luge and Sascha Sauer 17. A Proteomic Workflow Using High Throughout De Novo Sequencing towards Complementation of Genome Information for Improved Comparative Crop Science Reinhard Turetschek, David Lyon, Getinet Desalegn, Hans-Peter Kaul, and Stefanie Wienkoop 18. From Phospho-Proteome to Modelling of Plant Signalling Pathways Maksim Zakhartsev, Heidi Pertl-Obermeyer, and Waltraud X. Schulze 19. Interpretation of Quantitative Shotgun Proteomic Data Elise Aaseb ø, Frode S. Berven, Frode Selheim, Harald Barsnes, and Marc Vaudel 20.
A Simple Workflow for Large Scale Shotgun Glycoproteomics Astrid Guldbrandsen, Harald Barsnes, Ann Cathrine Kroksveen, Frode A. Berven, and Marc Vaudel 21. Systemic Analysis of Regulated Functional Networks Luis Francisco Hern á ndez S á nchez, Elise Aaseb ø, Frode Selheim , Frode S. Berven, Helge R æ der, Harald Barsnes, and Marc Vaudel.