PART I: From Anatomy to Tractography 1. The Brain and its Pathways 2. Neurobiology of Connections 3. Past and Present of Mapping Brain Connections 4. From Brownian motion to the brain connectome: My perspective and historical view of Diffusion MRI PART II: Diffusion MRI 5. Physics of Diffusion Imaging: Fundamentals 6. Diffusion MRI acquisition for tractography: diffusion encoding 7. Diffusion MRI acquisition for tractography: Diffusion sequences 8.
Diffusion MRI acquisition for tractography: Beyond the in vivo adult human brain 9. Artifacts and Diffusion MRI Processing 10. Single Shell Models: from DTI to HARDI 11. Multi-shell Models 12. From Diffusion Models to Fiber Orientations PART III: Tractography Algorithms 13. Deterministic Tractography 14. Probabilistic Tractography 15. Shortest Path Tractography 16.
Global Tractography 17. Machine Learning in Tractography 18. Improving Tractography with Multimodal Integration & Anatomical Priors 19. Tractography in normal and pathological anatomy : practical considerations 20. Tractography Visualization PART IV: From Streamlines to Tracts 21. Dissecting White Matter Pathways : A Neuroanatomical Approach 22. Dissecting White Matter Pathways : Automatic Approaches 23. Methods and statistics for diffusion MRI tractometry 24.
Connectivity and Connectomics 25. Tractography Validation Part 1: what needs validation, numerical simulations, and phantoms 26. Tractography Validation Part 2: The use of anatomical model systems and measures for validation 27. Tractography Validation Part 3: Lessons Learned through validation studies 28. Current challenges and opportunities for tractography PART V: Tractography Applications 29. Tractography: Applications to Neurodevelopment, Ageing and Plasticity 30. Tractography: Linking Behavior with White Matter Networks 31. Tractography as a Clinical Tool 32.
Ex-vivo and Preclinical Tractography: Techniques and Applications at High Field 33. "Multicenter Studies and Harmonization: Problems, Solutions, and Open Challenges" PART VI: Appendix A. Vectors and Tensors B. Numerical Integration C. Interpolation, Splines and Smoothing D. Spherical Harmonics.