Using Fluorescence Microscopy and Immunoblotting for Monitoring Mitophagy in Budding Yeast.- Methods to Monitor Nucleophagy in Yeast.- Synthetic Dimerization Approaches for In Vivo Studies in Saccharomyces cerevisiae.- Assays to Study Mitophagy in Plants.- Assessing Neuronal Mitophagy during Development in the Nematode Caenorhabditis elegans.- In Vivo Monitoring of Nucleophagy in Caenorhabditis elegans.- Analysis of Mitophagy Reporters in Drosophila.- Studying Selective Autophagy of Protein Aggregates using Particles Induced by Multimerization (PIMs).

- Methods for Monitoring ER-phagy.- Quantitative Super-Resolution Imaging of ER-phagy Initiation in Cells.- Fluorescence Methods to Measure Pexophagy.- Methods for Monitoring Mitophagy using mt-Keima.- Monitoring Mitophagy Dynamics in Live Cells.- Methods for Monitoring NCOA4-Mediated Ferritinophagy.- Method to Purify Phase-Separated p62 Bodies using Fluorescence-Activated Particle Sorting.- In Silico Assessment of LIR Motif-Containing Proteins Binding to ATG8-Family Proteins.

- High Throughput Screening for LC3/GABARAP Binders Utilizing the Fluorescence Polarization Assay.- Thermodynamic Characterization of LC3/GABARAP:Ligand Interactions by Isothermal Titration Calorimetry.- Determination of hATG8 Binding Selectivity of Autophagy-Interacting Motif (AIM) Peptides Using Native Electrospray Ionization Mass Spectrometry.