UNIX and Perl to the Rescue! : A Field Guide for the Life Sciences (And Other Data-Rich Pursuits)
UNIX and Perl to the Rescue! : A Field Guide for the Life Sciences (And Other Data-Rich Pursuits)
Click to enlarge
Author(s): Bradnam, Keith
ISBN No.: 9780521169820
Pages: 428
Year: 201207
Format: Trade Paper
Price: $ 74.86
Dispatch delay: Dispatched between 7 to 15 days
Status: Available

Part I. Introduction and Background: 1. Introduction; 2. How to use this book; Part II. Installing Unix and Perl: 3. What do I need in order to learn Unix and Perl?; 4. Installing Linux on a PC; 5. Installing a code editor; Part III.


Essential Unix: 6. Introduction to Unix; 7. The Unix terminal; 8. The Unix command prompt; 9. Your first Unix command; 10. The hierarchy of a Unix file system; 11. Finding out where you are in the filesystem; 12. How to navigate a Unix filesystem; 13.


Absolute and relative paths; 14. Working with your home directory; 15. The Unix shell; 16. Environment variables; 17. Introduction to command-line options; 18. Main pages; 19. Working with directories; 20. The importance of saving keystrokes; 21.


Moving and renaming files; 22. Moving and renaming directories; 23. How to remove files; 24. How to copy files and directories; 25. Working with text files; 26. Introduction to aliases; 27. Editing text files; 28. Automating Unix commands; 29.


How to hide files and find hidden files; 30. Creating a configuration file; 31. Programming with Unix; 32. Unix file permissions; 33. How to specify which directories contain programs; 34. Creating useful shell scripts; 35. Unix summary; Part IV. Essential Perl: 36.


Hello world; 37. Scalar variables; 38. Use warnings; 39. Maths and functions; 40. Perl vs perl; 41. Conditional statements; 42. Use strict; 43. Stopping programs; 44.


Working with strings; 45. Dealing with special characters; 46. Matching operators; 47. The transliteration operator; 48. List context; 49. Introduction to arrays; 50. Array manipulation; 51. The @ARGV array; 52.


Defined and undefined variables; 53. Sorting; 54. Introduction to loops; 55. More loops; 56. Loop control; 57. Data input and output; 58. Reading and writing files; 59. Introduction to hashes; 60.


Working with hashes; 61. Introduction to regular expressions; 62. Regular expression metacharacters; 63. Working with regular expressions; 64. Interacting with other programs; 65. Using functions and subroutines; 66. Returning data from a subroutine; 67. Part IV summary; Part V.


Advanced Unix: 68. Introduction to advanced Unix; 69. Introduction to process control; 70. The grep command; 71. Viewing, and controlling, program output; 72. Redirecting input and output; 73. Standard error; 74. Connecting commands with pipelines; 75.


Advanced text manipulation; Part VI. Advanced Perl: 76. Regular expressions revisited; 77. Function libraries; 78. References and 2-dimensional arrays; 79. Records and other hash references; 80. Using references with subroutines; 81. Complex data structures; 82.


Adding command-line options; 83. OOP basics; 84. CPAN; Part VII. Programming Topics: 85. Debugging strategies; 86. Common error messages; 87. Code beautification; 88. Abstraction; 89.


Data management; 90. Documentation; 91. Revision control; 92. Working with other peoples' data; 93. Getting help; Appendix; Index.


To be able to view the table of contents for this publication then please subscribe by clicking the button below...
To be able to view the full description for this publication then please subscribe by clicking the button below...